GSE69667

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Synergistic action of master transcription factors controls epit... 2016 · 126 cites
Competitive endogenous RNA is an intrinsic component of EMT regu... 2019 · 117 cites

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

16 / 16 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 127747065228 reported

total reads 632411214 reported

n content pct 0.002 measured

pct q20 bases 96.9 measured

pct q30 bases 92.3 measured

gc content pct 47.8 measured

mean read length 101 measured

mean base quality 35.8 measured

adapter content pct 0.13 measured

duplication rate pct 13.42 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0.13 measured ×0.4 100%

duplication rate pct 13.42 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0