GSE70413

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Pitx2 promotes heart repair by activating the antioxidant respon... 2016 · 277 cites

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Mus musculus

Instrument

Ion Torrent Proton

Platform

ION_TORRENT

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

14 / 14 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 25235281092 reported

total reads 207157183 reported

n content pct 0 measured

pct q20 bases 73 measured

pct q30 bases 1.4 measured

gc content pct 46.7 measured

mean read length 85.2 measured

mean base quality 21.4 measured

adapter content pct 0 measured

duplication rate pct 34.51 measured

supplementary file types BED, BEDGRAPH, CSV reported

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 1.4 measured ×1 0%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0