Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE71754

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Klebsiella pneumoniae bulk RNA-seq with 50 bp reads and good quality (92.1% Q30, 95.7% Q20) supports bacterial expression profiling and virulence-associated gene identification. The 55.5% GC content is consistent with Gram-negative bacteria; the dataset is suitable for reuse in comparative bacterial transcriptomics and pathogenesis research.

Data type / assay
bulk-RNA-seq
Organism
Klebsiella pneumoniae
Metrics (value · how obtained)
n content pct 0.012 measured
pct q20 bases 95.7 measured
pct q30 bases 92.1 measured
gc content pct 55.5 measured
mean read length 50 measured
mean base quality 36.4 measured
adapter content pct 0.02 measured
duplication rate pct 64.53 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.1 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 64.53 measured ×0.4 23%
QC cost 49 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0