Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE72141

GEO first seen 2016

GATA3-mediated chromatin reprogramming in breast cancer cells

Organism
Homo sapiens
Samples
80
Type
Genome binding/occupancy pro...
Submitted
2015-08-18

Pioneer transcription factors bind to silent chromatin, and initiate cell fate conversion. One potential pioneer factor, GATA3, is a critical component for multiple cellular programs. GATA3 is of particular interest as it regulates gene expression in breast cancers, and low expression correlates with poor prognosis. Here we demonstrate the pioneering activity of GATA3 utilizing a cellular reprogramming system (the mesenchymal-epithelial transition) in breast cancer cells. During the epithelial t...

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Motoki TakakuSara A GrimmShimbo TakashiWade A Paul
Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 98.3 measured
pct q30 bases 93.7 measured
gc content pct 40.2 measured
mean read length 50 measured
mean base quality 35.9 measured
adapter content pct 0 measured
duplication rate pct 0.97 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0