Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE72368

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq from a HiSeq 2500 platform produced 840 million short reads (42.85 billion bases total) with exceptional quality (98.2% Q30, 99.3% Q20), enabling highly sensitive and robust transcriptome profiling. The large-scale, high-quality dataset is ideal for reuse in comprehensive expression studies, rare-variant detection, and multi-sample meta-analyses.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
46 / 23 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 42854373636 reported
total reads 840281836 reported
n content pct 0.001 measured
pct q20 bases 99.3 measured
pct q30 bases 98.2 measured
gc content pct 50.6 measured
mean read length 51 measured
mean base quality 38 measured
adapter content pct 0 measured
duplication rate pct 58.27 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.2 measured ×1 100%
mean base quality 38 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 58.27 measured ×0.4 37%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0