GSE72713

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Transcriptome Analysis Reveals Distinct Gene Expression Profiles... 2016 · 100 cites

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 96.2 measured

pct q30 bases 92.7 measured

gc content pct 46.2 measured

mean read length 100 measured

mean base quality 36 measured

adapter content pct 0.19 measured

duplication rate pct 18.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%

mean base quality 36 measured ×0.6 100%

adapter content pct 0.19 measured ×0.4 100%

duplication rate pct 18.24 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0