Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE72899

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Escherichia coli str. K-12 substr. MG1655
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
5 / 5 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 7796364650 reported
total reads 155927293 reported
n content pct 0.004 measured
pct q20 bases 99.2 measured
pct q30 bases 98.6 measured
gc content pct 52.2 measured
mean read length 50 measured
mean base quality 38.9 measured
adapter content pct 43.05 measured
duplication rate pct 50.93 measured
supplementary file types WIG reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.6 measured ×1 100%
mean base quality 38.9 measured ×0.6 100%
adapter content pct 43.05 measured ×0.4 0%
duplication rate pct 50.93 measured ×0.4 54%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0