GSE73870

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

On the Relationship of Protein and mRNA Dynamics in Vertebrate E... 2015 · 239 cites

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Xenopus laevis bulk RNA-seq with 101 bp reads provides good depth for isoform-level expression measurement, though quality is moderate (82.3% Q30, 87.8% Q20). Elevated GC content (56.2%) may reflect genomic bias; the dataset is suitable for developmental transcriptomics and comparative vertebrate expression studies with standard quality-based filtering.

Data type / assay

bulk-RNA-seq

Organism

Xenopus laevis

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 87.8 measured

pct q30 bases 82.3 measured

gc content pct 56.2 measured

mean read length 101 measured

mean base quality 32.2 measured

adapter content pct 0.54 measured

duplication rate pct 53.19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.3 measured ×1 62%

mean base quality 32.2 measured ×0.6 70%

adapter content pct 0.54 measured ×0.4 100%

duplication rate pct 53.19 measured ×0.4 49%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0