GSE74054

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Set1 and MLL1/2 Target Distinct Sets of Functionally Different G... 2015 · 76 cites

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Schmidtea mediterranea planarian bulk RNA-seq with 51 bp reads and excellent quality (95.7% Q30, 97.8% Q20) provides reliable gene expression measurement. Low GC content (38.7%) is consistent with the organism's genome composition; the high base accuracy supports sensitive expression studies and is suitable for investigating regeneration and stem cell biology in this model system.

Data type / assay

bulk-RNA-seq

Organism

Schmidtea mediterranea

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 97.8 measured

pct q30 bases 95.7 measured

gc content pct 38.7 measured

mean read length 51 measured

mean base quality 35.7 measured

adapter content pct 0 measured

duplication rate pct 63.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 63.43 measured ×0.4 26%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0