GSE74344

Oocyte-expressed Yes-associated Protein (YAP) is a Key Activator of the Early Zygotic Genome in Mouse

Organism

Mus musculus

Samples

6

Type

Expression profiling by high...

Submitted

2015-10-26

We generated maternal and paternal mouse models with Yap1-deletion, and elucidated the function of maternal YAP in zygotic genome activation.

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Chao YuYujiao Dang

Reused by

Characterization of zygotic genome activation-dependent maternal... 2019 · 149 cites
Oocyte-expressed yes-associated protein is a key activator of th... 2016 · 144 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 99.6 measured

pct q30 bases 96.3 measured

gc content pct 50.5 measured

mean read length 98.3 measured

mean base quality 37.2 measured

adapter content pct 0.11 measured

duplication rate pct 8.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%

mean base quality 37.2 measured ×0.6 100%

adapter content pct 0.11 measured ×0.4 100%

duplication rate pct 8.86 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0