Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE74488

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Arabidopsis thaliana bulk RNA-seq with 51 bp reads and good quality (94.5% Q30, 96.5% Q20) supports gene expression profiling in this model plant system. Moderate adapter content (1.32%) is easily removed via standard preprocessing; the dataset is well-suited for comparative plant genomics, developmental transcriptomics, and identification of stress-response genes.

Data type / assay
bulk-RNA-seq
Organism
Arabidopsis thaliana
Metrics (value · how obtained)
n content pct 0.003 measured
pct q20 bases 96.5 measured
pct q30 bases 94.5 measured
gc content pct 45.8 measured
mean read length 51 measured
mean base quality 37.8 measured
adapter content pct 1.32 measured
duplication rate pct 38.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%
mean base quality 37.8 measured ×0.6 100%
adapter content pct 1.32 measured ×0.4 100%
duplication rate pct 38.76 measured ×0.4 81%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0