GSE74601

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Me... 2016 · 722 cites

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ChIP-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 / 12 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 11703752600 reported

total reads 234075052 reported

n content pct 0.005 measured

pct q20 bases 96.6 measured

pct q30 bases 90.6 measured

gc content pct 41.4 measured

mean read length 50 measured

mean base quality 35.5 measured

adapter content pct 0 measured

duplication rate pct 4.96 measured

supplementary file types WIG reported

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0