Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE75473

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with very short 26.9 bp reads and good quality (96.6% Q30, 97.4% Q20) is unusual in modern RNA-seq protocols; the extreme read shortness may reflect targeted small RNA or degraded material sequencing. This dataset is limited for isoform resolution but may be useful for detecting highly abundant transcripts or studying small RNA expression patterns.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 97.4 measured
pct q30 bases 96.6 measured
gc content pct 56 measured
mean read length 26.9 measured
mean base quality 35.7 measured
adapter content pct 0 measured
duplication rate pct 78.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%
mean base quality 35.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 78.18 measured ×0.4 0%
QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0