Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE75606

GEO first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with 101 bp reads and good base quality (93.6% Q30, 95.9% Q20) is substantially compromised by high adapter content (49.41%), indicating serious library preparation or quality issues. Successful reuse requires rigorous adapter removal; if achievable, the underlying sequences could support isoform-level expression analysis, but verification of data integrity is critical.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.013 measured
pct q20 bases 95.9 measured
pct q30 bases 93.6 measured
gc content pct 49 measured
mean read length 101 measured
mean base quality 35.9 measured
adapter content pct 49.41 measured
duplication rate pct 45.44 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 49.41 measured ×0.4 0%
duplication rate pct 45.44 measured ×0.4 66%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0