Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE76234

GEO first seen 2017

Distinct routes of lineage development reshape the human blood hierarchy across ontogeny

Organism
Homo sapiens
Samples
24
Type
Expression profiling by high...
Submitted
2015-12-21

In a classical view of hematopoiesis, the various blood cell lineages arise via a hierarchical scheme starting with multipotent stem cells that become increasingly restricted in their differentiation potential through oligopotent and then unipotent progenitors. We developed a cell-sorting scheme to resolve myeloid (My), erythroid (Er), and megakaryocytic (Mk) fates from single CD34+ cells and then mapped the progenitor hierarchy across human development. Fetal liver contained large numbers of di...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Sasan ZandiFaiyaz NottaGavin WilsonJohn E Dick
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.005 measured
pct q20 bases 95.7 measured
pct q30 bases 90.4 measured
gc content pct 47.6 measured
mean read length 101 measured
mean base quality 35.5 measured
adapter content pct 0.65 measured
duplication rate pct 49.32 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.4 measured ×1 100%
mean base quality 35.5 measured ×0.6 100%
adapter content pct 0.65 measured ×0.4 100%
duplication rate pct 49.32 measured ×0.4 57%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0