GSE78512

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Identification of candidate anti-cancer molecular mechanisms of... 2016 · 77 cites

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human bulk RNA-seq with 101 bp reads provides good length for isoform resolution and moderate quality (88.5% Q30, 95% Q20), though elevated GC content (55.5%) and modest adapter contamination (3.86%) are present. After standard preprocessing, the dataset supports transcript-level expression quantification and is suitable for reuse in developmental or disease expression studies.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 95 measured

pct q30 bases 88.5 measured

gc content pct 55.5 measured

mean read length 101 measured

mean base quality 34.5 measured

adapter content pct 3.86 measured

duplication rate pct 43.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.5 measured ×1 93%

mean base quality 34.5 measured ×0.6 100%

adapter content pct 3.86 measured ×0.4 90%

duplication rate pct 43.31 measured ×0.4 70%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0