GSE79082

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

A viral Sm-class RNA base-pairs with mRNAs and recruits microRNA... 2017 · 85 cites

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Callithrix jacchus (marmoset) bulk RNA-seq with 50 bp reads achieves excellent quality (96.2% Q30, 98.1% Q20) and elevated GC content (59.2%), consistent with this primate genome. The high base accuracy supports reliable expression profiling in this non-human primate model and is suitable for reuse in comparative primate genomics and brain-specific transcriptome studies.

Data type / assay

bulk-RNA-seq

Organism

Callithrix jacchus

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 98.1 measured

pct q30 bases 96.2 measured

gc content pct 59.2 measured

mean read length 50 measured

mean base quality 36.7 measured

adapter content pct 0.55 measured

duplication rate pct 59.94 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 0.55 measured ×0.4 100%

duplication rate pct 59.94 measured ×0.4 34%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0