GSE79422

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Transformation of Accessible Chromatin and 3D Nucleome Underlies... 2018 · 208 cites

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ATAC-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 98.2 measured

pct q30 bases 94.6 measured

gc content pct 52.1 measured

mean read length 50 measured

mean base quality 36.9 measured

adapter content pct 0.77 measured

duplication rate pct 4.79 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%

QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0