Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE79467

GEO first seen 2016

The TfoY regulon of Vibrio cholerae.

Organism
Vibrio cholerae
Samples
6
Type
Expression profiling by high...
Submitted
2016-03-21

In this study, we determined the TfoY regulon of V. cholerae using RNA-seq to better uderstand the protein's function.

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Melanie Blokesch
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Vibrio cholerae
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 98 measured
pct q30 bases 94.6 measured
gc content pct 48.7 measured
mean read length 101 measured
mean base quality 36.5 measured
adapter content pct 1.61 measured
duplication rate pct 65.22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 1.61 measured ×0.4 100%
duplication rate pct 65.22 measured ×0.4 22%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0