GSE79666

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Arid1b Haploinsufficiency Causes Abnormal Brain Gene Expression... 2017 · 79 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human bulk RNA-seq with 100 bp reads achieves excellent quality (96.3% Q30, 98.7% Q20) despite slightly elevated N-content (0.12%) and modest adapter presence (1.85%). The longer reads with high base accuracy support comprehensive isoform quantification and complex transcript characterization, suitable for reuse in expression studies and alternative splicing analysis.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.117 measured

pct q20 bases 98.7 measured

pct q30 bases 96.3 measured

gc content pct 49.4 measured

mean read length 100 measured

mean base quality 37 measured

adapter content pct 1.85 measured

duplication rate pct 20.9 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%

mean base quality 37 measured ×0.6 100%

adapter content pct 1.85 measured ×0.4 100%

duplication rate pct 20.9 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0