GSE80207

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Down-syndrome-induced senescence disrupts the nuclear architectu... 2022 · 101 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human bulk RNA-seq of premium quality driven by excellent base accuracy (Q30=92.9%, mean=35.2) and minimal contamination (zero adapters). Suitable for variant discovery and high-confidence expression quantification.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.006 measured

pct q20 bases 96.3 measured

pct q30 bases 92.9 measured

gc content pct 38.2 measured

mean read length 50 measured

mean base quality 35.2 measured

adapter content pct 0.26 measured

duplication rate pct 21.67 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.9 measured ×1 100%

mean base quality 35.2 measured ×0.6 100%

adapter content pct 0.26 measured ×0.4 100%

duplication rate pct 21.67 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0