Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE80262

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq with very short 30 bp reads, elevated N-content (3.38%), and moderate quality (92.5% Q30, 95.1% Q20) reflects challenging input or protocol conditions. The extreme read shortness severely limits isoform resolution and sequence uniqueness; reuse is suitable only for high-abundance transcript detection or as a component of larger datasets.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 3.376 measured
pct q20 bases 95.1 measured
pct q30 bases 92.5 measured
gc content pct 47.8 measured
mean read length 30 measured
mean base quality 35.6 measured
adapter content pct 0.01 measured
duplication rate pct 18.14 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%
mean base quality 35.6 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 18.14 measured ×0.4 100%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0