Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE80811

GEO first seen 2016

Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

Organism
Oryza sativa
Samples
4
Type
Expression profiling by high...
Submitted
2016-04-29

RNA-seq analyses of leaves from drought stressed rice plants was performed, producing differential expression profiles of genes containing coding RNAsand noncoding RNAs.

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Pil J ChungJu-Kon Kim
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Oryza sativa
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 23789554948 reported
total reads 117770074 reported
supplementary file types XLSX reported
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently