GSE81627

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Chromatin-remodelling factor Brg1 regulates myocardial prolifera... 2016 · 78 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Zebrafish bulk RNA-seq with excellent sequencing quality (90.3% Q30) and clean base composition across 101bp reads; ideal for transcriptome profiling in *Danio rerio* addressing developmental, regeneration, or comparative biology questions.

Data type / assay

bulk-RNA-seq

Organism

Danio rerio

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 96.8 measured

pct q30 bases 90.3 measured

gc content pct 48 measured

mean read length 101 measured

mean base quality 35.3 measured

adapter content pct 0.05 measured

duplication rate pct 17.54 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.3 measured ×1 100%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 0.05 measured ×0.4 100%

duplication rate pct 17.54 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0