Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE82144

GEO first seen 2017

Myc regulates chromatin decompaction and nuclear architecture during B cell activation

Organism
Mus musculus
Samples
258
Type
Genome binding/occupancy pro...
Submitted
2016-06-01

50 years ago, Vincent Allfrey and colleagues discovered that lymphocyte activation triggers massive acetylation of chromatin. However, the molecular mechanisms driving epigeneticaccessibility are still unknown. We here show that stimulated lymphocytes decondense chromatin by three differentially regulated steps. First, chromatin is repositioned away from the nuclear periphery in response to global acetylation. Second, histone nanodomainclusters decompact into mononucleosome fibers through a mech...

Provenance — who produced it, who reused it

Linked to 10 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Kyong-Rim Kieffer-KwonKeisuke NimuraSuhas RaoJianliang XuSeolkyoung JungAleksandra PekowskaMarei DoseEvan StevensEwy MathePeng DongSu-Chen HuangMaria RicciLaura BaranelloYing ZhengFrancesco ArdoriWolfgang ReschDiana StavrevaSTeevenson NelsonMichael McAndrewAdriel CasellasElizabeth FinnCharles GregorySteven JohnsonWendy DuboisMaria CosmaEric BatchelorDavid LevensRovert PhairTom MisteliLino TessarolloGordon HagerMelike LakadamyaliZhe LiuMonique FloerHari ShroffErez Lieberman-AidenRafael Casellas
Reused by

8 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
738 / 258 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 3499007356950 reported
total reads 21899773936 reported
supplementary file types BW, HIC, TXT reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently