GSE84447

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Lineage tracing reveals the phylodynamics, plasticity, and paths... 2022 · 339 cites
Urinary detection of lung cancer in mice via noninvasive pulmona... 2020 · 98 cites

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.012 measured

pct q20 bases 96.6 measured

pct q30 bases 91.5 measured

gc content pct 45.4 measured

mean read length 101 measured

mean base quality 35.7 measured

adapter content pct 1.57 measured

duplication rate pct 31.58 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.5 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 1.57 measured ×0.4 100%

duplication rate pct 31.58 measured ×0.4 97%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0