Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE84727

GEO first seen 2020

An integrated genetic-epigenetic analysis of schizophrenia: Evidence for co-localization of genetic associations and differential DNA methylation.

Organism
Homo sapiens
Samples
847
Type
Methylation profiling by gen...
Submitted
2016-07-22

Abstract Background: Schizophrenia is a severe, highly heritable, neuropsychiatric disorder characterized by episodic psychosis and altered cognitive function. Despite success in identifying genetic variants associated with schizophrenia, there remains uncertainty about the causal genes involved in disease pathogenesis and how their function is regulated. Insights into the functional complexity of the genome have focussed attention on the role of non-sequence-based genomic variation in health a...

Provenance — who produced it, who reused it

Linked to 16 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Eilis HannonEmma DempsterJoana VianaJoe BurrageAdam R SmithRuby MacdonaldDavid St ClairColette MustardGerome BreenSebastian ThermanJaakko KaprioTimothea ToulopoulouHilleke E PolMarc M BohlkenRene S KahnIgor NenadicChristina M HultmanRobin M MurrayDavid A CollierNick BassHugh GurlingAndrew McQuillinLeonard SchalkwykJonathan Mill
Reused by

14 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently