GSE84875

GEO first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Inhibition of Dihydroorotate Dehydrogenase Overcomes Differentia... 2016 · 487 cites

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse bulk RNA-seq with strong base-quality metrics (87.9% Q30) and minimal N-content, using 75bp reads well-suited for standard transcriptomics workflows; foundation for mouse differential expression or developmental studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.046 measured

pct q20 bases 95.2 measured

pct q30 bases 87.9 measured

gc content pct 51.2 measured

mean read length 75 measured

mean base quality 35.1 measured

adapter content pct 0 measured

duplication rate pct 23.36 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%

mean base quality 35.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 23.36 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0