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Provenance — who produced it, who reused it
Linked to 14 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Genetic insights into biological mechanisms governing human ovar... 2021 · 445 cites
13 further papers cite this accession but reuse could not be confirmed.
Deep data QC
96/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
43 / 43 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
1613660208600
reported
total reads
5378867362
reported
n content pct
0
measured
pct q20 bases
95.1
measured
pct q30 bases
90.2
measured
gc content pct
44.1
measured
mean read length
150
measured
mean base quality
38.2
measured
adapter content pct
0.19
measured
duplication rate pct
39.92
measured
supplementary file types
TXT
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.2
measured
×1
100%
mean base quality
38.2
measured
×0.6
100%
adapter content pct
0.19
measured
×0.4
100%
duplication rate pct
39.92
measured
×0.4
78%
QC cost
30 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0