GSE86354

Alternative processing of GTEx RNA-seq data

Type

Expression profiling by high...

Submitted

2016-09-01

We reprocessed RNA-Seq data for 1,558 samples across 8 tissue sites from the GTEx project. We follow the exact pipeline performed by Rahman et al. Bioifnormatics 2015 (PMID: 26209429)

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Dvir AranBoris Oskotsky

Comprehensive analysis of normal adjacent to tumor transcriptome... 2017

Reused by

Atlas of clinically distinct cell states and ecosystems across h... 2021 · 341 cites
bc-GenExMiner 4.5: new mining module computes breast cancer diff... 2021 · 222 cites

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Files available

TXT

Metrics (value · how obtained)

supplementary file types TXT reported

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently