Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE86978

GEO first seen 2021

AR Expression in Breast Cancer CTCs Associates with Bone Metastases

Organism
Homo sapiens
Samples
77
Type
Expression profiling by high...
Submitted
2016-09-15

Molecular drivers underlying bone metastases in human cancer are not well understood, in part due to constraints in bone tissue sampling. Here, we undertook RNA sequencing of circulating tumor cells (CTCs) obtained from blood samples of women with metastatic estrogen receptor (ER)+ breast cancer, comparing cases with progression in bone versus visceral organs. Among the activated cellular pathways in CTCs from bone-predominant breast cancer is Androgen Receptor (AR) signaling. AR gene expression...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Nicola AcetoAditya BardiaBen S WittnerMaria C DonaldsonRyan O’KeefeAmanda EngstromFrancesca BersaniYu ZhengValentine ComaillsHuili ZhuOlivia MackenzieToshi ShiodaDennis SgroiRavi KapurDavid T TingSridhar RamaswamyMehmet TonerDaniel A HaberShyamala Maheswaran
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
476 / 77 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 53763775750 reported
total reads 1075275515 reported
supplementary file types XLS reported
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently