GSE87189

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBP... 2017 · 1,188 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Outstanding human bulk-RNA-seq with exceptional base quality (Q30=98.4%, mean=39) and very low duplication (18.76%). All measured metrics at optimal levels; FASTQ files available. Highly recommended for any reuse application requiring high-quality quantification.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.006 measured

pct q20 bases 99 measured

pct q30 bases 98.4 measured

gc content pct 49 measured

mean read length 51 measured

mean base quality 39 measured

adapter content pct 0 measured

duplication rate pct 18.76 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.4 measured ×1 100%

mean base quality 39 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 18.76 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0