GSE87366

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Developmental nonlinearity drives phenotypic robustness 2017 · 122 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse bulk RNA-seq with excellent metrics across all dimensions: Q30=95.7%, zero adapters, low duplication (19%), strong mean quality (34.8). Reliable for standard and exploratory RNA-seq analyses.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 97.1 measured

pct q30 bases 95.7 measured

gc content pct 48.6 measured

mean read length 75.5 measured

mean base quality 34.8 measured

adapter content pct 0 measured

duplication rate pct 19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%

mean base quality 34.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 19 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0