Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE87631

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk-RNA-seq with 125 bp reads at 96% Q20 and 92.7% Q30 across 861 million bases maintains good quality for transcript profiling. The 48.9% GC and mean quality 36.2 support comprehensive expression analysis; elevated 16.85% adapter contamination warrants preprocessing.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.019 measured
pct q20 bases 96 measured
pct q30 bases 92.7 measured
gc content pct 48.9 measured
mean read length 125 measured
mean base quality 36.2 measured
adapter content pct 16.85 measured
duplication rate pct 47.77 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 16.85 measured ×0.4 18%
duplication rate pct 47.77 measured ×0.4 61%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 75