GSE89134

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Hit-and-run programming of therapeutic cytoreagents using mRNA n... 2017 · 175 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human bulk RNA-seq of exceptional quality with highest mean base accuracy (Q=38.4) among A-grade datasets and perfect duplication/adapter metrics. Q30=96.7% provides outstanding confidence for variant and expression analysis.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.027 measured

pct q20 bases 97.8 measured

pct q30 bases 96.7 measured

gc content pct 49.3 measured

mean read length 50 measured

mean base quality 38.4 measured

adapter content pct 0.29 measured

duplication rate pct 22.85 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%

mean base quality 38.4 measured ×0.6 100%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 22.85 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0