GSE90441

Whole genome sequence, SNP chips and pedigree structure

Organism

Canis lupus familiaris; Canis lupus

Samples

795

Type

SNP genotyping by SNP array;...

Submitted

2016-11-22

Building demographic profiles in domestic dog breeds to optimize genetic trait mapping study design

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Dayna L DregerMaud RimbaultBrian W DavisAdrienne BhatnagarHeidi G ParkerElaine A Ostrander

Reused by

Genomic Analyses Reveal the Influence of Geographic Origin, Migr... 2017 · 475 cites
Domestic dog lineages reveal genetic drivers of behavioral diver... 2022 · 81 cites

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

genotype

Organism

Canis lupus familiaris; Canis lupus

Files available

IDAT, TXT

Metrics (value · how obtained)

supplementary file types IDAT, TXT reported

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently