GSE92238

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Arid1b haploinsufficient mice reveal neuropsychiatric phenotypes... 2017 · 115 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Exceptional mouse bulk-RNA-seq with perfect scores across all measured metrics and exceptionally low duplication (10.42%). High base quality (Q30=93.9%, mean=34.4%) and minimal adapter content (0.19%) make this ideal for sensitive expression comparisons.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 95.8 measured

pct q30 bases 93.9 measured

gc content pct 46.4 measured

mean read length 74.5 measured

mean base quality 34.4 measured

adapter content pct 0.19 measured

duplication rate pct 10.42 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 34.4 measured ×0.6 100%

adapter content pct 0.19 measured ×0.4 100%

duplication rate pct 10.42 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0