GSE92423

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Comparative transcriptomics reveals circadian and pluripotency n... 2022 · 86 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse bulk RNA-seq of excellent quality with perfect metrics and high mean accuracy (Q=37.6). Zero adapters and strong Q30 (95.8%) ensure reliable gene expression quantification. Highly recommended.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 98.6 measured

pct q30 bases 95.8 measured

gc content pct 47.8 measured

mean read length 50 measured

mean base quality 37.6 measured

adapter content pct 0 measured

duplication rate pct 19.45 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%

mean base quality 37.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 19.45 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0