Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE93811

GEO first seen 2017

Single cell profiling of hCS and hSS derived from human iPSC

Organism
Homo sapiens
Samples
2
Type
Expression profiling by high...
Submitted
2017-01-18

Single gene expression proifiling of dissociated hiPSC-derived 3D cultures of the pallium and subpallium at day 105 of differentiation (n= 11,838 cells; BDTM Resolve system), revealing the various cell types and heterogenity within cell types in the cultured organoids

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Sergiu PascaChristina Fan
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 155469414287 reported
total reads 1040947381 reported
n content pct 0.012 measured
pct q20 bases 93.7 measured
pct q30 bases 91.4 measured
gc content pct 45.2 measured
mean read length 74.8 measured
mean base quality 33.8 measured
adapter content pct 8.65 measured
duplication rate pct 33.66 measured
supplementary file types CSV reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.4 measured ×1 100%
mean base quality 33.8 measured ×0.6 97%
adapter content pct 8.65 measured ×0.4 63%
duplication rate pct 33.66 measured ×0.4 92%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0