Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE9485

GEO first seen 2015

cRNA amplification methods enhance microarray identification of transcripts expressed in the nervous system

Organism
Caenorhabditis elegans
Samples
8
Type
Expression profiling by arra...
Submitted
2007-10-31

Background: DNA microarrays provide a powerful method for global analysis of gene expression. The application of this technology to specific cell types and tissues, however, is typically limited by small amounts of available mRNA, thereby necessitating amplification. Here we compare microarray results obtained with two different methods of RNA amplification to profile gene expression in the C. elegans larval nervous system. Results: We used the mRNA-tagging strategy to isolate transcripts spec...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Joseph D WatsonShenglong WangStephen E Von StetinaW C SpencerShawn LevyPhillip J DexheimerNurith KurnJoe D HeathDavid M Miller III
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
microarray-expr
Organism
Caenorhabditis elegans
Read type
not sequencing
Files available
CEL, CHP
Metrics (value · how obtained)
supplementary file types CEL, CHP reported
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently