GSE94974

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

IDH1-R132H acts as a tumor suppressor in glioma via epigenetic u... 2019 · 290 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Excellent mouse bulk-RNA-seq with optimal performance across all measured metrics. Low duplication (27.12%) and strong base quality (Q30=92.3%, mean=35.8) support reliable quantification. Highly recommended for reuse.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.005 measured

pct q20 bases 96.3 measured

pct q30 bases 92.3 measured

gc content pct 50.1 measured

mean read length 52 measured

mean base quality 35.8 measured

adapter content pct 0.01 measured

duplication rate pct 27.12 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 27.12 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0