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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Arid1a Has Context-Dependent Oncogenic and Tumor Suppressor Func... 2017 · 255 cites
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ATAC-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 / 10 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
20577606793
reported
total reads
276166038
reported
n content pct
0.001
measured
pct q20 bases
96.7
measured
pct q30 bases
95.2
measured
gc content pct
43.7
measured
mean read length
74.5
measured
mean base quality
34.6
measured
adapter content pct
32.46
measured
duplication rate pct
25
measured
supplementary file types
BW, NARROWPEAK
reported
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.2
measured
×1
100%
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0