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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Lamin B1 mapping reveals the existence of dynamic and functional... 2018 · 109 cites
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ATAC-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
27 / 27 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
202158088050
reported
total reads
1805370128
reported
n content pct
0.001
measured
pct q20 bases
98.2
measured
pct q30 bases
95.8
measured
gc content pct
45.1
measured
mean read length
50
measured
mean base quality
37.8
measured
adapter content pct
0.01
measured
duplication rate pct
11.35
measured
supplementary file types
BED, BEDGRAPH, TAR, TXT
reported
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.8
measured
×1
100%
QC cost
12 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0