GSE96914

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Small molecule JQ1 promotes prostate cancer invasion via BET-ind... 2019 · 72 cites

Deep data QC

31/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human bulk RNA-seq severely compromised and unsuitable for reuse; near-total base-calling collapse with Q30=1.3% and mean Q=21.3% (both scored 0/100) indicates terminal sequencing or demultiplexing failure. Reject entirely.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 72.3 measured

pct q30 bases 1.3 measured

gc content pct 54.3 measured

mean read length 140.4 measured

mean base quality 21.3 measured

adapter content pct 0 measured

duplication rate pct 37.16 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 31/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 1.3 measured ×1 0%

mean base quality 21.3 measured ×0.6 0%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 37.16 measured ×0.4 84%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0