GSE97213

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Single Cell and Open Chromatin Analysis Reveals Molecular Origin... 2018 · 81 cites

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Moderate-quality mouse bulk-RNA-seq with strong base quality (Q30=95.2%, mean=35.7%) but elevated adapter content (9.2%) and moderate duplication (44.31%). Long reads (126 bp) require careful adapter trimming; suitable for reuse with quality-aware preprocessing.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.011 measured

pct q20 bases 97.3 measured

pct q30 bases 95.2 measured

gc content pct 59.4 measured

mean read length 126 measured

mean base quality 35.7 measured

adapter content pct 9.2 measured

duplication rate pct 44.31 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 9.2 measured ×0.4 60%

duplication rate pct 44.31 measured ×0.4 68%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0