GSE97317

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Hypoxia is a Key Driver of Alternative Splicing in Human Breast... 2017 · 75 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Perfect-scoring bulk-RNA-seq human dataset across all measured metrics. High read length (90 bp) combined with minimal duplication (26.43%), excellent Q30 (94.4%), and mean quality (36.7) make this ideal for reuse in any expression context.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.004 measured

pct q20 bases 98.5 measured

pct q30 bases 94.4 measured

gc content pct 50.5 measured

mean read length 90 measured

mean base quality 36.7 measured

adapter content pct 0.22 measured

duplication rate pct 26.43 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.4 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 0.22 measured ×0.4 100%

duplication rate pct 26.43 measured ×0.4 100%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0