GSE97326

GEO first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Resetting the epigenetic balance of Polycomb and COMPASS functio... 2018 · 198 cites

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

High-quality bulk-RNA-seq human dataset with excellent base quality (Q30=94.1%, mean=34.2) and zero adapter content. Moderate duplication (39.55%) is the sole limiting factor; otherwise suitable for reuse with standard analysis workflows.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 95.7 measured

pct q30 bases 94.1 measured

gc content pct 46.7 measured

mean read length 50.4 measured

mean base quality 34.2 measured

adapter content pct 0 measured

duplication rate pct 39.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%

mean base quality 34.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 39.55 measured ×0.4 79%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0