GSE97361

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Myomerger induces fusion of non-fusogenic cells and is required... 2017 · 254 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

High-quality mouse RNA-seq from Illumina HiSeq 2000 with all measured metrics at optimal levels. Q30 bases (95.5%) and very low duplication (17.87%) are particularly strong; FASTQ files available and checksum verified. Excellent reuse candidate.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 / 1 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 3098220750 reported

total reads 20654805 reported

n content pct 0.003 measured

pct q20 bases 97.5 measured

pct q30 bases 95.5 measured

gc content pct 49.8 measured

mean read length 75 measured

mean base quality 37.5 measured

adapter content pct 0.29 measured

duplication rate pct 17.87 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 17.87 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0