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RNA sequencing data for 30 bladder cancer cell lines
RNA-sequencing of a panel of urothelial cancer cells. The goal of the study is to examine the genome-wide expression profile in each of the 30 urothelial cancer cells tested in our laboratory.
Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
I-ling LeeDavid McConkeyXiaoping SuWoonyoung Choi
Reused by
- Comprehensive Molecular Characterization of Muscle-Invasive Blad... 2017 · 2,492 cites
- PPARγ activation serves as therapeutic strategy against bladder... 2019 · 121 cites
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
30 / 30 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
281845324968
reported
total reads
1854245559
reported
supplementary file types
TXT
reported
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently