GSE97954

GEO first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Prolonged Mek1/2 suppression impairs the developmental potential... 2017 · 296 cites

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Excellent mouse bulk-RNA-seq with outstanding base quality (Q30=96%, mean=37.7) and zero adapter content. Moderate duplication (37.89%) is the only constraint. Suitable for reuse in quantitative expression studies.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.014 measured

pct q20 bases 98.7 measured

pct q30 bases 96 measured

gc content pct 51.6 measured

mean read length 51 measured

mean base quality 37.7 measured

adapter content pct 0 measured

duplication rate pct 37.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%

mean base quality 37.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 37.89 measured ×0.4 83%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0